Repository for IMS-RETREAT 2022
This website contains examples and references for the creation of packages, interactive documents and web pages to facilitate reproducibility of analysis and distribution of materials among peers.
General tricks and toolkit
- IMS-repository of useful programming functions. Toolkit by Teresa Engelbrecht
Package Development
- Vignette how to create an R package and toy example
- IMS-example: CohortPlat by Elias Meyer: https://github.com/el-meyer/CohortPlat
R-markdown
- Vignette: How to create a markdown document, and where to find some templates
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IMS-examples:
- R-markdown tips and tricks by Jonas Brugger
- Re-analysis template by Jonas Brugger
Github websites
- Vignette how to create a website and toy example
- IMS-example: NCC by Pavla Krotka: https://pavlakrotka.github.io/NCC/
References
- Package development with devtools cheatsheet: https://raw.githubusercontent.com/rstudio/cheatsheets/main/package-development.pdf
- Hadley’s book on package development: https://r-pkgs.org/
- R-markdown: https://tysonbarrett.com/Rstats/chapter-9-reproducible-workflow-with-rmarkdown.html
- References for websites: Hadley’s book on package development: https://r-pkgs.org/